| Cover | | Date
 | Title  Album | Points
 | US peak | UK peak | US rock peak | US alt. peak | Comment |
|---|
 | 1. | 11/1999 | | 265
 | 102 US | 61 UK | 7 rock | 3 alt. | [artist #4 hit] [album cut] written by Brandon Boyd, Mike Einziger, Alex Katunich, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
 | 2. | 07/2000 | | 190
 | 107 US | | 17 rock | 2 alt. | [album cut] written by Brandon Boyd |
 | 3. | 12/2000 | | 350
 | 9 US | 40 UK | 8 rock | ✫1 alt. | [artist #1 hit] [album cut] written by Brandon Boyd, Mike Einziger, Alex Katunich, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
 | 4. | 08/2001 | | 251
 | 60 US | 27 UK | 4 rock | 2 alt. | [artist #5 hit] [album cut] written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Alex "Dirk Lance" Katunich |
 | 5. | 12/2001 | | 154
 | 105 US | | 9 rock | 9 alt. | [album cut] written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Alex "Dirk Lance" Katunich |
 | 6. | 05/2002 | | 167
 | 104 US | | 27 rock | 3 alt. | [album cut] written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Alex "Dirk Lance" Katunich |
| 7. | 09/2002 | | 25
 | | | 31 rock | | written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Alex "Dirk Lance" Katunich |
 | 8. | 09/2002 | | 12
 | | 34 UK | | | written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Alex "Dirk Lance" Katunich |
| 9. | 01/2004 | | 333
 | 55 US | 23 UK | 2 rock | ✫1 alt. | [artist #2 hit] [album cut] written by Brandon Boyd, Mike Einziger, Ben Kenney, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
 | 10. | 04/2004 | | 181
 | 116 US | 43 UK | 18 rock | 3 alt. | [album cut] written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Ben Kenney |
 | 11. | 06/2005 | | 89
 | | | 19 rock | 17 alt. | written by Brandon Boyd, Mike Einziger, Alex Katunich, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
 | 12. | 10/2006 | | 280
 | 66 US | 109 UK | 4 rock | ✫1 alt. | [artist #3 hit] [Immortal Digital] written by Brandon Boyd, Mike Einziger, Chris Kilmore, Ben Kenney & José Pasillas |
 | 13. | 01/2007 | | 185
 | 94 US | | 17 rock | 4 alt. | [Immortal Digital] written by Brandon Boyd, Mike Einziger, Chris Kilmore, Ben Kenney & José Pasillas |
 | 14. | 06/2007 | | 109
 | | | 38 rock | 8 alt. | written by Brandon Boyd, Mike Einziger, Ben Kenney, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
 | 15. | 2009 | | 141
 | | | 34 rock | 7 alt. | written by Brandon Boyd, Mike Einziger, José Pasillas (as Jose Pasillas II), Chris Kilmore & Ben Kenney |
 | 16. | 01/2009 | | 231
 | 113 US | | 40 rock | ✫1 alt. | [Smi Epic 708415] written by Brandon Boyd, Mike Einziger, Ben Kenney, Chris Kilmore & José Pasillas (as Jose Antonio Pasillas II) |
| Top 100 hits | 5 | 6 | 15 | 14 | |
| Top 40 hits | 1 | 4 | 15 | 14 | |
| Top 10 hits | 1 | | 6 | 13 | |
| ✫ #1 hits | | | | 4 | |
| US | UK | rock | alt. | |