| Cover | | Date  | Title • Artist  Album | Points  | Charts Peaks | Comment |
|---|
 | 1. | 06/1999 | | 537
 | US 9 UK 15 US rock ✫1 US alt. ✫1 | [Warner 16913] written by Flea, John Frusciante, Anthony Kiedis & Chad Smith |
 | 2. | 02/1999 | | 359
 | US 51 UK 16 US rock 6 US alt. ✫1 | [album cut] written by A. Jay Popoff & Jeremy Popoff |
 | 3. | 10/1999 | | 358
 | US 6 UK 2 US alt. ✫1 | written by Mark Hoppus & Tom DeLonge |
 | 4. | 07/1999 | | 355
 | US ✫1 UK 3 US AC 11 US rock 10 US alt. 24 | featuring Rob Thomas
[Grammy Award for Song of the Year 2000]
[Grammy Award for Record of the Year 2000] [Arista 13718] written by Itaal Shur & Rob Thomas |
 | 5. | 01/1999 | | 353
 | US 73 US rock ✫1 US alt. 5 | [Atlantic album cut] written by Ed Roland |
 | 6. | 10/1999 | | 353
 | US 19 UK 21 US rock 2 US alt. ✫1 | written by Dave Grohl, Taylor Hawkins & Nate Mendel |
 | 7. | 05/1999 | | 346
 | US 2 UK 42 US rock 5 US alt. 2 | [Epic 79197] written by Wayne Cochran, Joe Carpenter, Randall Hoyal & Bobby McGlon |
 | 8. | 09/1999 | | 327
 | US 67 UK 46 US rock 3 US alt. ✫1 | [Trauma album cut] written by Gavin Rossdale |
 | 9. | 10/1999 | | 324
 | US 12 UK 25 US dance ✫1 US rock 4 US alt. 3 | written by Richard Patrick |
| 10. | 09/1999 | | 297
 | US 52 UK 47 US rock ✫1 | written by Scott Stapp & Mark Tremonti |
 | 11. | 01/1999 | | 277
 | US 74 UK 2 US rock 10 US alt. 4 | [album cut] written by Dexter Holland, Noodles, Greg K. & Ron Welty |
 | 12. | 09/1999 | | 267
 | US 78 UK 62 US rock 2 US alt. 3 | [album cut] written by Ed Kowalczyk |
 | 13. | 11/1999 | | 265
 | US 102 UK 61 US rock 7 US alt. 3 | [album cut] |
 | 14. | 12/1999 | | 254
 | US 74 US rock ✫1 US alt. 18 | [live] written by James Hetfield & Lars Ulrich |
 | 15. | 05/1999 | | 253
 | US 4 UK 24 US alt. 2 | [album cut] written by Greg Camp |
 | 16. | 01/1999 | | 248
 | US 36 UK ✫1 US alt. 2 | [Astralwerks 66254] written by Fatboy Slim & Camille Yarbrough |
 | 17. | 10/1999 | | 246
 | US 88 US rock 8 US alt. ✫1 | written by Wes Borland, John Otto, Sam Rivers & Fred Durst |
 | 18. | 04/1999 | | 246
 | US ✫1 UK ✫1 US AC 18 US dance 5 | [C2/Columbia 79124] written by Ricky Martin, Desmond Child & Draco Rosa (as Robi Rosa) |
 | 19. | 12/1999 | | 242
 | US ✫1 UK 42 US alt. 5 | [RCA 65981] written by Matt Scannell |
| 20. | 10/1999 | | 240
 | US 7 US alt. ✫1 | [R] written by Scott Stapp & Mark Tremonti |
 | 21. | 05/1999 | | 227
 | US 9 UK 8 US alt. 5 | based up "more more more - andrea true conn." [Work album cut] written by Marc Costanzo & Gregg Diamond |
 | 22. | 06/1999 | | 226
 | US 80 US rock 6 US alt. 3 | [Flip album cut] written by Wes Borland, John Otto, Sam Rivers & Fred Durst |
| 23. | 05/1999 | | 224
 | US 49 UK 177 US rock 3 US alt. 7 | [Maverick album cut] written by Randy Bachman, Burton Cummings, Jim Kale & Garry Peterson |
 | 24. | 11/1999 | | 222
 | US 102 US rock 5 US alt. 6 | [Republic 58341] written by Sully Erna & Robbie Merrill |
 | 25. | 05/1999 | | 222
 | US 58 UK 38 US rock 19 US alt. 2 | [MCA album cut] written by Mark Hoppus & Tom DeLonge |
 | 26. | 05/1999 | | 214
 | US 105 UK 11 US rock 11 US alt. 6 | [album cut] written by Dexter Holland |
 | 27. | 11/1999 | | 208
 | US 108 UK 24 US rock 7 US alt. 7 | [album cut] |
| 28. | 08/1999 | | 207
 | US 110 US rock 2 US alt. 10 | written by Travis Meeks |
 | 29. | 12/1999 | | 205
 | US 19 US rock 5 US alt. 13 | written by Kid Rock (as RJ Ritchie), Uncle Kracker (as Matthew Shafer) & John Travis |
 | 30. | 02/1999 | | 200
 | US 106 UK 24 US rock 10 US alt. 6 | [album cut] written by Jonathan Davis, James "Munky" Shaffer, Reginald "Fieldy" Arvizu, Brian "Head" Welch & David Silveria |
| 31. | 02/1999 | | 197
 | US 107 US rock 3 US alt. 13 | [album cut] written by Thomas Flowers, Doug Eldridge, Ric Ivanisevich & Fred Nelson Jr. |
 | 32. | 10/1999 | | 195
 | US 69 UK 32 US rock 11 US alt. 6 | written by Zack de la Rocha, Tim Commerford, Brad Wilk & Tom Morello |
 | 33. | 08/1999 | | 194
 | US 82 UK 36 US rock 10 US alt. 5 | [Lava album cut] written by Kid Rock (as RJ Ritchie), Uncle Kracker (as Matthew Shafer), John Travis & James Trombly |
| 34. | 03/1999 | | 193
 | US rock ✫1 US alt. 33 | written by Josh Todd |
 | 35. | 08/1999 | | 190
 | US 102 UK 62 US rock 5 US alt. 7 | written by Chris Cornell |
 | 36. | 06/1999 | | 187
 | US 7 UK 90 US AC 29 US alt. 7 | [Lava 84536] written by David Kahne & Sugar Ray |
| 37. | 07/1999 | | 186
 | US 103 US rock 3 US alt. 10 | [album cut] |
 | 38. | 10/1999 | | 179
 | US 107 US rock 5 US alt. 9 | [album cut] written by Scott Weiland & Robert DeLeo |
 | 39. | 11/1999 | | 176
 | US 57 UK 3 US rock 33 US alt. 11 | written by Peter Buck, Mike Mills & Michael Stipe |
 | 40. | 06/1999 | | 174
 | US 106 US rock 4 US alt. 12 | written by Layne Staley & Jerry Cantrell |
 | 41. | 05/1999 | | 171
 | US rock 5 US alt. 31 | written by Sully Erna |
 | 42. | 06/1999 | | 166
 | US 102 UK 41 US rock ✫1 | written by Phil Collen & Robert John "Mutt" Lange |
| 43. | 04/1999 | | 165
 | US 109 UK 47 US rock 13 US alt. 7 | written by Everlast (as Erik Schrody) & Ross Dante |
 | 44. | 09/1999 | | 164
 | US 108 UK 35 US rock 16 US alt. 7 | [album cut] written by Flea, John Frusciante, Anthony Kiedis & Chad Smith |
 | 45. | 12/1999 | | 158
 | US 117 US rock 29 US alt. 3 | [album cut] written by A. Jay Popoff & Jeremy Popoff |
 | 46. | 12/1999 | | 158
 | US 113 US rock 14 US alt. 4 | [album cut] written by Billy Corgan |
 | 47. | 04/1999 | | 154
 | US 104 US rock 11 US alt. 10 | [Atlantic 84705] written by Kid Rock (as RJ Ritchie), Uncle Kracker (as Matthew Shafer) & Jason Krause |
| 48. | 03/1999 | | 153
 | US 25 US alt. 3 | [Warner 16569] written by Matt Sims & Dave Cooley |
| 49. | 01/1999 | | 147
 | US 112 US rock 23 US alt. 5 | [album cut] |
| 50. | 09/1999 | | 144
 | US 118 US rock 8 US alt. 17 | featuring Everlast [album cut] written by Everlast (as Erik Schrody) |
 | 51. | 08/1999 | | 143
 | US rock 10 US alt. 14 | written by Johnny April, Aaron Lewis, Mike Mushok & Jon Wysocki |
| 52. | 06/1999 | | 141
 | US 16 UK 76 US rock 28 US alt. 13 | written by John Rzeznik |
| 53. | 01/1999 | | 139
 | US 124 UK 29 US rock 4 | [album cut] written by traditional |
 | 54. | 01/1999 | | 138
 | US rock 7 US alt. 22 | written by Rob Zombie & Scott Humphrey |
 | 55. | 03/1999 | | 136
 | US 108 US rock 13 US alt. 9 | [album cut] written by John Rzeznik |
| 56. | 03/1999 | | 132
 | US 116 US rock 2 | as Sammy Hagar & the Waboritas written by Gary Glitter, Sammy Hagar & Mike Leander |
| 57. | 07/1999 | | 127
 | UK 85 US rock 8 US alt. 17 | written by Richard Patrick |
 | 58. | 10/1999 | | 123
 | UK 41 US rock 19 US alt. 11 | written by Dexter Holland |
| 59. | 07/1999 | | 121
 | US rock 16 US alt. 18 | |
 | 60. | 02/1999 | | 120
 | US 36 UK 2 US R&B 18 US alt. 37 | produced by Dr. Dre [Aftermath 95040] written by Eminem (as Marshall Mathers) & Dr. Dre (as Andre Young) |
 | 61. | 03/1999 | | 119
 | UK 118 US rock 15 US alt. 12 | written by Daniel Johns |
| 62. | 09/1999 | | 119
 | UK 39 US rock 21 US alt. 11 | written by Trent Reznor |
 | 63. | 08/1999 | | 119
 | UK 70 US rock 16 US alt. 13 | written by Our Lady Peace & Arnold Lanni |
 | 64. | 04/1999 | | 117
 | US 29 US alt. 5 | [album cut] written by David Kahne & Sugar Ray |
 | 65. | 05/1999 | | 116
 | US 20 US rock 21 US alt. 25 | written by Train |
 | 66. | 09/1999 | | 115
 | US 119 US rock 39 US alt. 6 | written by Nick Hexum (as Nicholas Hexum), P-Nut (as Aaron Wills) & SA Martinez (as Doug Martinez) |
| 67. | 08/1999 | | 114
 | US 2 US AC 4 | [C2 79259] written by George Noriega, Jon Secada & Draco Rosa (as Robi Rosa) |
 | 68. | 10/1999 | | 113
 | US 28 UK 46 US rock 37 US alt. 17 | written by Adam Duritz, Dan Vickrey, Ben Mize & David Bryson |
| 69. | 10/1999 | | 110
 | US 104 US alt. 6 | [album cut] |
 | 70. | 03/1999 | | 109
 | US 123 UK 30 US alt. 7 | [album cut] written by Tom Dumont & Gwen Stefani |
 | 71. | 08/1999 | | 108
 | US rock 14 US alt. 26 | written by Sevendust |
 | 72. | 12/1999 | | 106
 | US rock 27 US alt. 11 | written by Trent Reznor |
| 73. | 02/1999 | | 104
 | US 82 UK ✫1 US dance 9 | [Logic/Beyond 78040] written by Jimmy Destri |
| 74. | 10/1999 | | 103
 | US rock 5 | as Kenny Wayne Shepherd Band |
 | 75. | 05/1999 | | 102
 | UK 45 US rock 28 US alt. 12 | written by Daniel Johns & Ben Gillies |
| 76. | 02/1999 | | 101
 | UK 9 US dance 4 US alt. 23 | written by Butch Vig, Steve Marker, Duke Erikson & Shirley Manson |
| 77. | 03/1999 | | 98
 | US 120 US rock 5 | [album cut] written by Tom Petty |
| 78. | 08/1999 | | 96
 | UK 60 US rock 34 US alt. 11 | written by A. Jay Popoff & Jeremy Popoff |
| 79. | 06/1999 | | 96
 | US 123 US rock 10 US alt. 32 | written by Ed Roland |
| 80. | 09/1999 | | 95
 | US 5 UK 70 US AC 9 US country 62 | as Chris Gaines [Capitol 58788] written by Gordon Kennedy, Wayne Kirkpatrick & Tommy Sims |
 | 81. | 10/1999 | | 95
 | US 11 US alt. 26 | [album cut] written by Greg Camp |
| 82. | 12/1999 | | 94
 | US rock 6 | written by Dave Mustaine, Marty Friedman & Bud Prager |
 | 83. | 11/1999 | | 93
 | UK ✫1 | [BRIT Awards Best British Single 2000] charted as She's the One/It's Only Us in UK charts written by Karl Wallinger |
| 84. | 12/1999 | | 92
 | US rock 18 US alt. 23 | |
| 85. | 11/1999 | | 91
 | US 40 US rock 35 US alt. 11 | written by Stephan Jenkins |
| 86. | 03/1999 | | 91
 | UK 13 US alt. 12 | written by Dolores O'Riordan |
 | 87. | 07/1999 | | 87
 | US rock 6 | written by Dave Mustaine, Marty Friedman & Bud Prager |
| 88. | 08/1999 | | 86
 | UK 10 US dance 11 US alt. 21 | written by Trevor Gray, Howard Gray, Ian Hoxley & Noko |
 | 89. | 10/1999 | | 83
 | UK 28 US alt. 11 | written by MCA (as Adam Yauch), Mike D (as Michael Diamond) & Ad-Rock (as Adam Horovitz) |
 | 90. | 02/1999 | | 83
 | US rock 7 | written by Chris Robinson & Rich Robinson |
| 91. | 03/1999 | | 81
 | US rock 18 US alt. 28 | written by Trevor Hurst, Robbie Morfitt, Robert Wagner, D. Sigmond & Don Binns |
| 92. | 01/1999 | | 81
 | UK 2 | |
 | 93. | 03/1999 | | 81
 | UK 2 | written by Damon Albarn, Graham Coxon, Alex James & David Rowntree |
 | 94. | 08/1999 | | 79
 | US rock 25 US alt. 24 | written by Josh Todd |
| 95. | 07/1999 | | 78
 | US rock 8 | |
 | 96. | 10/1999 | | 78
 | US rock 20 US alt. 36 | written by Wayne Static & Tony Campos |
| 97. | 01/1999 | | 77
 | US rock 12 US alt. 40 | |
 | 98. | 04/1999 | | 75
 | UK 23 US rock 28 US alt. 30 | written by Twiggy Ramirez & Madonna Wayne Gacy |
 | 99. | 02/1999 | | 74
 | UK 13 US alt. 21 | [album cut] written by Dan Wilson |
 | 100. | 06/1999 | | 74
 | UK 9 US alt. 29 | written by Tom Rowlands, Ed Simons & Noel Gallagher |